An installer for the UMBC NvJ additions for working with large RNA can be downloading using the link below.
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<a href='umbc-NvJ-installer.tcl'>Click here to download</a>
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Download to a known location, then in NvJ, change to that directory and type:
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<b>source umbc-NvJ-installer.tcl</b>
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This will download the remaining files and put them in the right place. You will need to restart NvJ in order to use the new features.
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Contact Jan with any questions.
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If you'd like to use the suggested directory structure for organizing your projects, this script might be useful:
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<a href='makeRNAproj'>makeRNAproj</a>
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To use it, download to a location (prefably in your PATH) and run:
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makeRNAproj [NAME] [SEQ]
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where [NAME] is the fragment name [SEQ] is the RNA sequence. For example:
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makeRNAproj stem1 GGAUCGUGUACC